PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g15530.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 188aa    MW: 20188 Da    PI: 7.734
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g15530.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer36.98.7e-122273054
     ZF-HD_dimer 30 psegee.gtaaalkCaACgCHRnFHR 54
                    ps+ ++  +++++kCaACgCHRnFHR
  Vang02g15530.2  2 PSPAATaDDPSSIKCAACGCHRNFHR 27
                    5555555789***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-7127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.9E-8727IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.98E-2038109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-3040110IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-2748105IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MPSPAATADD PSSIKCAACG CHRNFHRGGG LSVAPENTAA PALAHHSRKR FRTKFTQEQK  60
EKMHEFADKV GWKMQKRDEN MVMEFCSEVG VDRGVLKVWM HNNKNTFAKK DNLNGSPANG  120
TNHVASPNKA TVRSNVNGLE QEHGGGINGN SDHDHNHNHN LGSSHDVNEY DNDSGTNGGG  180
TNGSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-22491061875ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511481.13e-96PREDICTED: zinc-finger homeodomain protein 9
TrEMBLA0A0L9VP281e-103A0A0L9VP28_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T8B11e-103A0A0S3T8B1_PHAAN; Uncharacterized protein
STRINGGLYMA13G05420.16e-66(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-31homeobox protein 34